Publications

Emerging roles of the Protein Phosphatase 1 (PP1) in the context of viral infections (pdf)
Corda P, Bollen M, Ribeiro D, Fardilha M.
Cell Commun Signal. 2024

Amyloid pathology reduces ELP3 expression and tRNA modifications leading to impaired proteostasis (pdf)
Pereira M, Ribeiro DR, Berg M, Tsai AP, Dong C, Nho K, Kaiser S, Moutinho M, Soares AR. Biochim Biophys Acta Mol Basis Dis. 2023

The hidden RNA code: implications of the RNA epitranscriptome in the context of viral infections (pdf)
Ribeiro DR, Nunes A, Ribeiro D, Soares AR. Front Genet. 2023

Determining the Importance of Peroxisomal Proteins for Viral Infections in Cultured Mammalian Cells (pdf)
Marques M, Ferreira AR, Ribeiro D. Methods Mol Biol. 2023

Tools to Investigate the Peroxisome-Dependent Antiviral Response (pdf)
Ramos B., Ferreira A.R., Ribeiro D. Methods Mol Biol. 2023

Peroxisomes and Viruses: Overview on Current Knowledge and Experimental Approaches (pdf)
Ferreira V., Ferreira A. R., Ribeiro D. Methods Mol Biol. 2023

The physiological functions of human peroxisomes
Wanders R. J. A, Baes M., Ribeiro D., Ferdinandusse S. and Waterham H. Physiological Reviews 2023

Amyloid pathology reduces ELP3 expression and tRNA modifications leading to impaired proteostasis in Alzheimer’s disease models
Pereira M., Ribeiro D. R., Berg M., Tsai A. P., Nho K., Kaiser S., Moutinho M., Soares A. R. BioRxiv. 2023

Engineering potent live attenuated coronavirus vaccines by targeted inactivation of the immune
evasive viral deubiquitinase
(pdf)
Myeni S.K., Bredenbeek P.J., Knaap R.C.M., Dalebout T.J., Morales S.T., Sidorov I.A., Linger M.E., Oreshkova N., van Zanen-Gerhardt S., Zander S.A.L., Enjuanes L., Sola I., Snijder E.J., Kikkert M. Nat Commun. 2023

Ubiquitin variants potently inhibit SARS-CoV-2 PLpro and viral replication via a novel site distal to
the protease active site
(pdf)
van Vliet V.J.E., Huynh N., Palà J., Patel A., Singer A., Slater C., Chung J., van Huizen M., Teyra J., Miersch S., Luu G.K., Ye W., Sharma N., Ganaie S. Russell R., Chen C., Maynard M., Amarasinghe G.K., Mark B.L., Kikkert M., Sidhu S.S. PLoS Pathog. 2022

Editorial: Viruses and Epitranscriptomes: Regulation of Infection and Antiviral Response (pdf)
Soares A. R., Kikkert M., Kaiser-Kellner S., Ribeiro D., Front. Cell Dev. Biol., 2022

Upregulation of tRNA-Ser-AGA-2-1 Promotes Malignant Behavior in Normal Bronchial Cells (pdf)
Santos M., Fidalgo A., Varanda A. S., Soares A. R., Almeida G. M., Martins D., Mendes N., Oliveira C., Santos M. A. S., Front. Mol. Biosci., 2022

Human Cytomegalovirus vMIA Inhibits MAVS Oligomerization at Peroxisomes in an MFF-Dependent Manner (pdf)
Ferreira A. R., Gouveia A., Magalhães A. C., Valença I., Marques M., Kagan J. C., Ribeiro D. Front. Cell Dev. Biol., 2022, 10:871977.

Emerging roles of peroxisomes in viral infections (pdf)
Ferreira A.R., Marques M., Ramos B., Kagan J.C., Ribeiro D., Trends in Cell Biolgy, 2022, 32(2):124-139.

m5U54 tRNA Hypomodification by Lack of TRMT2A Drives the Generation of tRNA-Derived Small RNAs (pdf)
Pereira M., Ribeiro D. R., Pinheiro M. M., Ferreira M., Kellner S., Soares A. R. Int. J. Mol. Sci. 2021, 22(6), 2941.

Emerging Roles of tRNAs in RNA Virus Infections (pdf)
Nunes A., Ribeiro D. R., Marques M., Santos M. A. S., Ribeiro D., Soares A. R. Trends in Biochemical Sciences 2020, 45(9):794-805.

 

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